YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598522, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHELRVIARR GGSSAHVAVL FAIVVGTALF VLPPECIASV MPSLFWVCGV SVMQISIRAL  60
   61 FEEDYYSGVL EQLLIQNLLP EIILFFKILA NWFCVAIPIS IVAMVIDFVV LGDGFTHVLV 120
  121 FGAILSATLL IVNFIAAVGH ALVLGGEGGL VIAQVLIFPI VVPVVVYFNL LLQALKGVVF 180
  181 YTYTMTLLGV GMMCLIPISI FFVLSAIKLA VEQN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.92
Transmembrane Helix	12	32	0.91
Non-Cytoplasmic	33	39	0.64
Transmembrane Helix	40	61	0.72
Cytoplasmic	62	82	0.75
Transmembrane Helix	83	110	0.79
Non-Cytoplasmic	111	117	0.61
Transmembrane Helix	118	143	0.85
Cytoplasmic	144	149	0.60
Transmembrane Helix	150	171	0.91
Non-Cytoplasmic	172	182	0.61
Transmembrane Helix	183	207	0.86
Cytoplasmic	208	214	0.68