YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUOH_ANAPZ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLVGMVALM VGVLVSVAYL VYMERKVMAF MQLRHGPSVV GPWGLLQPFS DALKLLAKEC  60
   61 IIPFKSRGWA FFAAPVITFA LALAGWAVIP LGATEVIRDG VVVVMPYVVA DLNLGVLYVL 120
  121 AISSLEVYGI IMAGWASGSN YAFLGAIRSV SQMISYEMSM GLVMLSVSLC AGSLRLTDIV 180
  181 VARHAMPYWM DLLLLPMAGV FFVSMLAETN RHPFDLPEAE SELVSGYNVE YSSMSFAMFF 240
  241 LGEYANMILV SAMMVVLFLG GWYPPLNIHI LYYIPGFVWF CSKVFLLLFC FIWVRSTVPR 300
  301 YRYDQLMRLG WKVFLPFSFV WVMVISGVLL WVKALPGMQN

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.76
Transmembrane Helix	5	23	0.93
Cytoplasmic	24	67	0.80
Transmembrane Helix	68	90	0.90
Non-Cytoplasmic	91	113	0.75
Transmembrane Helix	114	138	0.79
Cytoplasmic	139	155	0.67
Transmembrane Helix	156	177	0.87
Non-Cytoplasmic	178	186	0.72
Transmembrane Helix	187	207	0.89
Cytoplasmic	208	239	0.89
Transmembrane Helix	240	263	0.85
Non-Cytoplasmic	264	270	0.78
Transmembrane Helix	271	294	0.90
Cytoplasmic	295	312	0.83
Transmembrane Helix	313	334	0.92
Non-Cytoplasmic	335	340	0.86