YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598386, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.74
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	64	0.84
Transmembrane Helix	65	86	0.74
Cytoplasmic	87	92	0.55
Transmembrane Helix	93	115	0.82
Non-Cytoplasmic	116	440	0.66
Transmembrane Helix	441	460	0.83
Cytoplasmic	461	470	0.41
Transmembrane Helix	471	489	0.40
Non-Cytoplasmic	490	547	0.50
Transmembrane Helix	548	572	0.81
Cytoplasmic	573	576	0.41
Transmembrane Helix	577	599	0.85
Non-Cytoplasmic	600	600	0.34
Transmembrane Helix	601	624	0.82
Cytoplasmic	625	639	0.40
Transmembrane Helix	640	664	0.84
Non-Cytoplasmic	665	739	0.46
Transmembrane Helix	740	765	0.76
Cytoplasmic	766	846	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRVARALVF LMFLVVTVPL TSYAAGDATA STPTEEENNL VHYRHAEATN PRCGAVEELA  60
   61 KIGSIGITAA LGGGVVGVGF LYVPIVGFRP LGFAMIAASI ATISAGIAAS APYFACNWSF 120
  121 VRHPVLRFES ADDVSRAAGG EVPTEGDYKE CAEPVAASEI LGKYGGDCSK EFAYMADYYA 180
  181 CLAESKSLED ARKAEPTCPS KKFKKASNYA WPKNRVSSSR YIEVCYRHPL GTVYMSPYVA 240
  241 ARLGFAGRDP KEVLKESKYP REATFGDNHM HNTKLAVSGA WTEFEYTIQC KVLKAGQEAK 300
  301 LHDATFRAVE RGAKLCVDAV KLSGVPFMAK PEIGCQMRPN SPPAPMCAKS VQRETKAADG 360
  361 SKIISYDNSG CYSCYVAETC KGVANLNSRS IFPITSVVVG CIVDSLKNLL DPPADCTGRA 420
  421 RAMNSVNPGF LKVAQEKLKK TVMAALILAL VLFSIKAVLG GVQSAGELYM TVIKFALVIY 480
  481 FTQGDAMSLA YEYLTKLSIG LSDIVLRAAG GDTGICDFQA SDYSPQYLYL MPWDRLDCRM 540
  541 MFYLGSQLTG GTGTGILLTV LLTAGLLIPA ILINAKVIIC LVAFFAVIML VLTIIWTVYV 600
  601 FLLSLIALTV LTIISPLMIP MSLFQATKGF FDGWTRQLMT YSLYPVILFA FLSLMFAVFD 660
  661 NLYFGELKFH RGGSDGTVAG APKAGQKIWF ELVDKKACEK RENETNLACI FDTMQFFSRP 720
  721 LVFGISVNAP EFKMATTAQI WTKLGVFVLI GFLFYHFLGS ISYIAGELAG DPRAGVIGSG 780
  781 GMNPRSIAHK AAGMASAVRG AASGKLSDLG SKARDAIKGI GSSDSGGTDK VSGGSSGGDS 840
  841 GKGGQS