YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598342, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKCGALFFV GSVIALAIAY VAQMFFGLVP CKLCLYERVP YFIALIPSII MMFKNFKGLF  60
   61 FVVVICYVAG IIISIYHAGL EYGWFTDFLH CAGDVGFGTS LEDIKANLLS KEEVVSCKVP 120
  121 SFVFMGISLS GWNAVYAISI LICAFLLRVR YTRDHHK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	27	0.88
Non-Cytoplasmic	28	33	0.57
Transmembrane Helix	34	53	0.64
Cytoplasmic	54	58	0.76
Transmembrane Helix	59	80	0.93
Non-Cytoplasmic	81	128	0.98
Transmembrane Helix	129	149	0.90
Cytoplasmic	150	157	0.85