YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607226, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGFLFFCFA GMVVFSAVAV VISSNPVYAV LSLILTFFIS SVLFILLGAE LVAMLLVVVY  60
   61 VGAVAVLFLF VVMMLDMDFV KSSHGFVRYY PICVALATAL FGCATYAIFH TKAAFIRGIG 120
  121 EAGASAMGNV FLIGSQMYTK YFYAFQMSGI LLLVASIGAL VLTVRSKAVK SRKQNVYAQV 180
  181 DRSSKVELCS PAVCKGIEDI D

Type	Start	End	Confidence
Cytoplasmic	1	4	0.66
Transmembrane Helix	5	23	0.91
Non-Cytoplasmic	24	27	0.68
Transmembrane Helix	28	48	0.89
Cytoplasmic	49	55	0.61
Transmembrane Helix	56	75	0.94
Non-Cytoplasmic	76	86	0.74
Transmembrane Helix	87	109	0.91
Cytoplasmic	110	114	0.75
Transmembrane Helix	115	135	0.80
Non-Cytoplasmic	136	141	0.80
Transmembrane Helix	142	164	0.92
Cytoplasmic	165	201	0.97