YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598281, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKNENNAAE CGKGVLAWIE YRLPVCAFFR ELANYQVPKN LNYAWNFGSL AGIALIIQVI  60
   61 TGIFLAMHYT PHVDHAFNSV ERIMRDVHYG WLVRYTHAVG ASFFFIVVYI HIFRGLYYGS 120
  121 YKKPRELVWF AGIIIFLVMM ATAFMGYVLP WGQMSFWGAT VITNLFSAVP VVGEGIVRWL 180
  181 WGGFSVDNPT LNRFFALHYL LPFTLIGLAG LHVIALHRFG SGNPSGVEVK SKRDTIPIWP 240
  241 YFIIKDCITF GLFFVFLYLF VFYAPNYLGH PDNYIEADPM VTPEHIVPEW YFLPFYAMLR 300
  301 SIPDKLLGVA TMFGSILVWF LLPFLDRSEV KSGKYRPVFK VFYWIFVLNF CLLMWIGGQE 360
  361 VKEPFISLGR LSTLYYFSYF SIVLPLLSKY EKCKELPSTL SDTVPEMK

Type	Start	End	Confidence
Cytoplasmic	1	44	0.66
Transmembrane Helix	45	69	0.85
Non-Cytoplasmic	70	92	0.65
Transmembrane Helix	93	117	0.82
Cytoplasmic	118	126	0.62
Transmembrane Helix	127	149	0.93
Non-Cytoplasmic	150	194	0.67
Transmembrane Helix	195	216	0.89
Cytoplasmic	217	240	0.79
Transmembrane Helix	241	262	0.91
Non-Cytoplasmic	263	304	0.86
Transmembrane Helix	305	325	0.90
Cytoplasmic	326	338	0.88
Transmembrane Helix	339	358	0.93
Non-Cytoplasmic	359	365	0.85
Transmembrane Helix	366	388	0.61
Cytoplasmic	389	408	0.70