YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607182, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	26	0.95
Cytoplasmic	27	49	0.89
Transmembrane Helix	50	71	0.85
Non-Cytoplasmic	72	81	0.70
Transmembrane Helix	82	102	0.92
Cytoplasmic	103	131	0.92
Transmembrane Helix	132	154	0.88
Non-Cytoplasmic	155	163	0.81
Transmembrane Helix	164	186	0.84
Cytoplasmic	187	194	0.68
Transmembrane Helix	195	216	0.82
Non-Cytoplasmic	217	238	0.82
Transmembrane Helix	239	260	0.76
Cytoplasmic	261	294	0.84
Transmembrane Helix	295	318	0.86
Non-Cytoplasmic	319	343	0.90
Transmembrane Helix	344	364	0.95
Cytoplasmic	365	381	0.94
Transmembrane Helix	382	402	0.92
Non-Cytoplasmic	403	407	0.76
Transmembrane Helix	408	428	0.90
Cytoplasmic	429	443	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFLKLFLAF PTVFLLLFSG FRLSFSSRWL QLRSFADAIS CLLKNRGAEF SSLAALCAIV  60
   61 GGNLGVGNLS GTAVALRAGG PGFIVWMVFI IILTSIIKYA TCYISIRTRE ERNGRTFGGP 120
  121 VVYSQHAFKT KWASLAVAII TMVCAVTVGN LVQVNSLSIS MHLIGQSPLS AGIVMAIALF 180
  181 IVTNLGSLGR VVSRVVPAMT IFYIVLAGLT LGKFGSNIIP SLKLILESAL SLSSLRDGAI 240
  241 LALVAETFTI IQVGAIRGIF ATDIGLGLEG TVHSMVVSKN VVDSNFATQQ SLVSIISPFI 300
  301 VALVTFITTL VLLTTGVWTD LSLESTNMCF AAFTSAFGKH YTEYALIALV FCFSLTTILT 360
  361 WFICSKEVLA YVSHNNRFME KCWTALFFFI IPLGSLGGLS LLWDIADISI SISIIINTLG 420
  421 ILLLLNRYKK EMFSALSKDS SKE