YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607126, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYINLLLVA LAVVGIGLFL RPVLYACIYA LFIAYLLNPI VTKLVLIGMS RAVASFVIIC  60
   61 ASAGVIGTLI VMLMPVLYSQ ALGVIKLLID RVPFLNLEDI KDILSSSGLP SYQEIKSATE 120
  121 NPLNLLTSDL FRGDGAEFLK LFKDAPSYFV KAVAGIAHSS LGIGSSIVTI LTSLLLSFYI 180
  181 LANWPSITKI ALELIPRSYV RDFALCFHKI DEVISSYLRG QTLVCLVLAC YYSFCFVVIR 240
  241 LEYSLVMGFV SGLLTFLPYI GPSLCCILSV CIAISQGFGI TKVVLVALMF LVGQMIESYV 300
  301 VTPGIVGKRL ALNQAWLVIG VVVFSSHAGF WGALLSVPFT AILSVLIQFA VKKYKTSNFY 360
  361 LSE

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.36
Transmembrane Helix	7	41	0.74
Cytoplasmic	42	52	0.45
Transmembrane Helix	53	77	0.87
Non-Cytoplasmic	78	155	0.67
Transmembrane Helix	156	182	0.80
Cytoplasmic	183	219	0.67
Transmembrane Helix	220	241	0.83
Non-Cytoplasmic	242	251	0.53
Transmembrane Helix	252	274	0.85
Cytoplasmic	275	282	0.45
Transmembrane Helix	283	306	0.76
Non-Cytoplasmic	307	326	0.60
Transmembrane Helix	327	351	0.77
Cytoplasmic	352	363	0.82