YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXX_ANAPZ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.91
Transmembrane Helix	27	46	0.89
Non-Cytoplasmic	47	50	0.73
Transmembrane Helix	51	72	0.95
Cytoplasmic	73	92	0.95
Transmembrane Helix	93	113	0.94
Non-Cytoplasmic	114	119	0.74
Transmembrane Helix	120	140	0.93
Cytoplasmic	141	147	0.88
Transmembrane Helix	148	167	0.93
Non-Cytoplasmic	168	174	0.74
Transmembrane Helix	175	195	0.91
Cytoplasmic	196	215	0.91
Transmembrane Helix	216	238	0.85
Non-Cytoplasmic	239	242	0.77
Transmembrane Helix	243	263	0.89
Cytoplasmic	264	272	0.89
Transmembrane Helix	273	294	0.93
Non-Cytoplasmic	295	296	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLMMGVPQH FALSTARDYW QLLKPRIMYL VVFTASTGMI MAPGTIHPLI GLVSALCIAM  60
   61 GSGAAGALNM WFDSDIDAVM SRTKTRPIPS GRISRAQALE CGLALSLLSV FIMSLTVNYV 120
  121 SAILLACSIA FYAVVYTMVL KRRTPQNIVI GGIAGAFPPV IGWTSVTGIP SIESLLLFMI 180
  181 IFLWTPPHFW ALSLLNRDEY KLAGIPMLSV YSVQSTKNHI MGYSLLLFIV ALLPGLYVAE 240
  241 TVLYEIIATS LGAVFLTHAY CLLKEVGEPS PKACMGLFSF SIYYLFLIFS AIALCS