YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607083, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFRFNNPL FLIPPKVAHS LTLFALQQGL YSSSVRKMPE CLSAQPLNFK VRTPIGLAAG  60
   61 FDKNAEVIRP VLSLGFGFTE VGTVTKYPQS GNKGPRLFRM HKQKAVINRL GFNNKGLTRL 120
  121 LKKVDSKDLN NLVFGINVGM YKGCSDPPAE YAELVQKVYG LSSYITINLS SPNTAGLREL 180
  181 QKRNSLNEIL ASVRKARYAV DHAESVPILL KIDPDLSDEV LQDVVDEVLR HKINGIIVSN 240
  241 TTTNFKLLGT KAPISRGGLS GQPLFSLSTR VLADVYSQTR GRVVLVGCGG VSSGAQALEK 300
  301 IRAGASLVQL YTAIVYGGFG IIDKINMELA DLLTRDGFNK VEQAVGIDVH

Type	Start	End	Confidence
Signal Peptide	1	32	0.71
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	350	0.98