YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607075, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIIPGSTSL ALAKSVSGML DVPMVIPCVS RFADGEINLE VPTGVATGSG HIVLMQSLSA  60
   61 PASDNLIELT LLTDAVRRTL APQRITAVIP YLCYSRQDRV MQRVDSQETF TSALSAKVIA 120
  121 RILSTSGLDH IVTLDLHSQQ AAGFFDVPFT NISAYDVFVD YLSSSNLLER LVIVSPDYGA 180
  181 LGRVRAFVRM LSSRYNMNSI QVAVIDKYRE GPGISEVMHV VGNVQDRHCF ILDDIVDSGG 240
  241 TLCNAAAALK TRGAISVHSF ITHGVLSGRA IDAIGTAELD SLVITDTIHN PDRVNLPEKI 300
  301 KVLSVDRLLS DYLLSHAVWR KS

Type	Start	End	Confidence
Signal Peptide	1	18	0.57
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	322	0.99