YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88607044, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.88
Transmembrane Helix	7	28	0.91
Non-Cytoplasmic	29	33	0.85
Transmembrane Helix	34	55	0.91
Cytoplasmic	56	65	0.92
Transmembrane Helix	66	88	0.93
Non-Cytoplasmic	89	124	0.77
Transmembrane Helix	125	150	0.82
Cytoplasmic	151	170	0.71
Transmembrane Helix	171	195	0.80
Non-Cytoplasmic	196	233	0.71
Transmembrane Helix	234	254	0.95
Cytoplasmic	255	263	0.76
Transmembrane Helix	264	283	0.95
Non-Cytoplasmic	284	291	0.72
Transmembrane Helix	292	313	0.68
Cytoplasmic	314	320	0.49
Transmembrane Helix	321	343	0.86
Non-Cytoplasmic	344	382	0.56
Transmembrane Helix	383	406	0.87
Cytoplasmic	407	411	0.44
Transmembrane Helix	412	431	0.58
Non-Cytoplasmic	432	446	0.80
Transmembrane Helix	447	469	0.85
Cytoplasmic	470	486	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVAFITGM FTALMAAFLL IPMTVSFLTG STDWVGFAGA FAIASSAGVL CILNGKRPRS  60
   61 IRGTEAIYLA CSVWIALTLV AAVPFVLADT TKLSYVGAVF EAMSGLTTTG ATVMSNLSQK 120
  121 SHGVLLWRAM LNAMGGLGVI TIGIFLLPNL KMAGLREIYN TEALGRECKS GVVRTVLYVT 180
  181 AIYILLMILC YASYNIVGMS MFDAICHAMT TVSTGGFSNY DDSLKHFDNV KIEIVAIVFM 240
  241 LLSSCPFVAY IHIVFERRFK NSQFLLYMGI LTASVLLSTV QFQNYANTDG YWSAFRFTVF 300
  301 TVVSLSTSTG YSIGDFSDCS FMVILVTMLT LCGGCAGSTN SGLKVLRLQI LAISAYDNIR 360
  361 NILLRGCSET KNIHIPDNVR NEAGYILFLY LFVFILACLC TSWLGYDLTT AITAVSSTLS 420
  421 NTGIGVGAVV GPEGDFSLLT EGTKLLLTAL MLLGRLEIVP VIVLLSTMLR IGIHRVKSMQ 480
  481 AACEKT