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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|88598098, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRSLLFIA IVVLSSCGGT CIEPGAGVSS SSQEVQVPVY PDGADHKRPV TYWVHSGYRV  60
   61 GEKDELKITV DRTIDLCPLD TKAKPVAIKM YPEHFSTPST EFYDTYIDVQ EGDQLRFSSV 120
  121 LYDLSFPDCK EISREHSPVI FHNNEVIFRD EACKKTVAIE ELCLSGATSE VLGDGSKKGL 180
  181 LHVKDAKGEC KEVPAGVQIP RVGGSIIQTP RMQFPLGYIG VVDSSVSGEL SFSYNNVITN 240
  241 GRIHDARVPK INMSPKLDQE SCELLKGSNI TLRLSNIDSI DQLKDRDAHN KHERSYTYGS 300
  301 NKAFTTGKRF GKPSETEEEK KQREKEEKIA ALLSEYTEYD LNCHCGYVCK PSNQVDDDCI 360
  361 RSIVTVMDGN VVCPTQTKFN GKDHEEDAGN QQHNIPDIRG DLSPEAFARS VSSLTGQHFG 420
  421 QNVAQKDSVI SVEKAYELAE GVIAVIVSIE NGKKILPSDI AQYCNDHQGK CKYLPEGIKS 480
  481 LKSSQSGLTF EKGSLKLDSD YIAPGSGRLY LAYWPYFGEL GKKVKERKGS EAAVVAASGS 540
  541 SSQRGLTVSR AKNYSENSLL SALAQRRFFW KQGMSSGSGG FLSSNDAGNT YVPLSRDEGI 600
  601 TTISYSVASA ATPVSAGKPA SERRISVART GEDIAVQGFY SLNVHRTCYA TSGQKLYMYI 660
  661 GDTPPTALPG KQQGAIPLDF EKINSSKSDK EEKEWSYKIN SGAEKRQGYI YFGVDVDPGY 720
  721 EAKLKQANNS DNYYAVHLWV PKWTPIFSSF FNFLQGVLLH VLYGTDLPTM GQDTKAVEAS 780
  781 KVIGRAMSPE YIGIQGGGQQ KKAGVVQQIY NNQVSTKPFW FAVRALLVLY LMFSVLGYII 840
  841 GIIQVTKHDI FVRIAKIALI ITLVSPGSWK FFTEHCFSIF ILGIPDIISA FNGYLGGDSS 900
  901 FAFLDSTLGI MLTSEFWLRM LSLFMAGPVG WLAFIGIIWA LFSFFLAMMR AIILYLFIMV 960
  961 GLAFLLTLAP IFITFLLFQV TKGLFDGWLK MLVNFMLQPI ILFAALAFLN QVIITSLHAV1020
 1021 TDFAACESCA VGFNISSKDS KAAPGQSDIC IIPALLPMGY AFELPVSDRI REGLARGDIG1080
 1081 FMGLPFSMAM LMVLILACKA TREFGDIAEV MAHSISGSMS GMTAAAVGAT QSMLSVVGLD1140
 1141 DATQHLIRSA VAMDPVASDK VRFDAEDSVQ PRHDGVKDNS GADSPGKEGS DSVQGASNAR1200
 1201 GAGAGEGPGA PVDNDGSNVG RSGEDNVSGG DSGGDIRRPG GGSSGSMQAG RPQFEDLLSD1260
 1261 DPGINDRVNA FREYRPGDGG VGEDDRISGS TTAGSGVSGG EADVDARVSH SREYRPGDGG1320
 1321 VGEGDDRVYG STTAGSGISG DAAGIDARGD HAREHQPADV GVGEGADRVS GSATAGSGIS1380
 1381 GDAVGVDARG DHAREHQPAD VGVGEGADRV SGSATAGSGI SGDEAGVDAR GDHAREHRLE1440
 1441 DGDTGAGVDN SDASADVNGD KVRGAVRDDL KDGKDDK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle