YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598075, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDNGFVLRG IANVARCETA SCTALIIAAQ AVGTSKIYGV SKNRMISRVI DILRSLGVRV  60
   61 FVEEGCVSVE GVGIGGFSNP EGGIDVGHYT IIAVTMLGIL STHAFSSLFF NSNAHDASVE 120
  121 VSGLDFAEIY EAIRILKASG CSFIRSEAFP VMVEGSDCAL PIEEKEVISS NVIKTALMLS 180
  181 SMNIAGKNCI YSDSSLSPTG ETLLKHFGAD ISVVTRPNID EITIMGQKEL YAKTVVIPAS 240
  241 SVGVLHLVAM ALVLRGSAIT ITGVLLDKTT KSFLDILIRM GGRIRLSAQS SHLYKIDVGF 300
  301 SNMLGIEIQS QEIQRIFSYL PLICVVSVFA AGVTKFFGLS KLCESKRKIL NALLIALDKF 360
  361 GIISKVTADH LEIHGRRDTL SEGCIIEVRE EHKSVIPFLI LGIASREEVF IKGMIDEQAR 420
  421 NFLEIISKLA AKDNVCIDVV

Type	Start	End	Confidence
Cytoplasmic	1	19	0.49
Transmembrane Helix	20	34	0.34
Non-Cytoplasmic	35	85	0.51
Transmembrane Helix	86	106	0.60
Cytoplasmic	107	233	0.57
Transmembrane Helix	234	254	0.50
Non-Cytoplasmic	255	316	0.88
Transmembrane Helix	317	339	0.90
Cytoplasmic	340	440	0.90