YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88598038, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDEGDPWGG GENAGPEKSK SNKKFSDPQF DALFVGIRTA FSGFPEGGGK SSLSKIHLFF  60
   61 LIGAALLLYA CTGFYTVNTE EKAVELLFGK YSGIQEPGLR YWFPKPFGQV LKVRVEMVSK 120
  121 EEVGGISFKS NPSGNNDGVM LTGDENIVNI NFDIQWKVSD AYNYLFNVRD ARPGATVKNA 180
  181 AESAMREIIG KSTLAFAIEG EGRAAIAYET KKLLQNILDR YHMGIEVLSI QLKKVDPPEK 240
  241 VISSFRDVQS ARADKERSIN EAFAYRNEVL PKAKGEAIRI KLDAEAYKSE VVNRAQGDSS 300
  301 KFQAIYKEYI NQPLPVRSRM YIEAMEEVLS NMDKVIVTDD MKGLFSYLPL TNGAIGSSGR 360
  361 SAIMEGKS

Type	Start	End	Confidence
Cytoplasmic	1	55	0.84
Transmembrane Helix	56	77	0.83
Non-Cytoplasmic	78	368	0.95