YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88606928, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSLARFLRS SLRYVVCFFV LVLSVGLYCS IFASPADYRQ GEVVRIMYLH VPSAWISLGS  60
   61 YTAIALLSLG TLLKKGDIFP MIARAIAPVG ACFTAVCLVA GCIWGKYTWG TWWVWDARLT 120
  121 SVLLLFFLFL GYASLWNVFE DQNRAAKTTS LFALFSAVNV PIVKFSVDIW ATLHQTSSIL 180
  181 RKGGIAIDSS MLIPLLTMFV ALSLLFVILT SLRFYTLLNN RQTSSSLYPF YHETT

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	34	0.91
Non-Cytoplasmic	35	50	0.89
Transmembrane Helix	51	73	0.89
Cytoplasmic	74	84	0.82
Transmembrane Helix	85	105	0.94
Non-Cytoplasmic	106	116	0.79
Transmembrane Helix	117	139	0.88
Cytoplasmic	140	148	0.88
Transmembrane Helix	149	171	0.80
Non-Cytoplasmic	172	191	0.83
Transmembrane Helix	192	215	0.87
Cytoplasmic	216	235	0.89