YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88606914, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYHLLDKKT SDFLIDAIEE ERAGDIREIL DNVDGVQLAS FLLTSTINQR KGLLKYVGDE  60
   61 LVSDTLVHLV PGLRQEAVST LGVSKVAALI ATLDSEDIVV VVEDLSKEYQ EDILRLLPEE 120
  121 KRLLISELLS YPEKSAGRLM HKDITVVPAH WSIQQLTTYL CDNAKQNRKL HEIFVVNPKL 180
  181 QPIGILSLDD VITSNKSCLV QQLMDEDIKV IRPSAKQEEV SEMFRQYSLL SAPVVDKEGR 240
  241 IMGSILVYDI INVVHEEAEE DALHLGMVSD SDISAPLMKT VFRRMPWLLV NLLTSTASSL 300
  301 VIGWFSDTIK SFVALSVIMP MIASMSGNSG LQALAVTVRA LATKQLTYRN SKRLLLKELC 360
  361 VGLVNGIIIA AIASVAVVIR FRDVSIEVLF AISMIITFSI ATLSGAAVPM LLNFFRADPA 420
  421 ISSSIIVCAA SDIMSFLFFL GLATLFLM

Type	Start	End	Confidence
Cytoplasmic	1	286	0.99
Transmembrane Helix	287	306	0.95
Non-Cytoplasmic	307	316	0.73
Transmembrane Helix	317	338	0.89
Cytoplasmic	339	358	0.84
Transmembrane Helix	359	379	0.94
Non-Cytoplasmic	380	388	0.81
Transmembrane Helix	389	412	0.90
Cytoplasmic	413	423	0.75
Transmembrane Helix	424	446	0.91
Non-Cytoplasmic	447	448	0.86