YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88606898, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSICFKIHTI VEWIANIDPV AFRLWFFKIH WYALSYIAGI SFVYWYLGKV GKYLPSHKEL  60
   61 LESLLSWAVL GAIIGGRAVY VLVYNPDFYF QFPLEIIKIW HGGMSFHGGF IGSITCTFAV 120
  121 CKKRKIAFAP LLDLCACSIP LGLFLGRLTN LINGELYGRV TNSCIGIVFP RSGDMLPRHP 180
  181 SQLYEALFEG LIPLILFNAL LRLTHIKQYP GMIACAFCVW YGTARCVIEF FREPDIQIGS 240
  241 VAFGWVTMGM LLSVPMILIP LIVFIVLVYK NVKYKTA

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.91
Transmembrane Helix	29	48	0.94
Cytoplasmic	49	62	0.90
Transmembrane Helix	63	84	0.90
Non-Cytoplasmic	85	98	0.93
Transmembrane Helix	99	121	0.89
Cytoplasmic	122	127	0.87
Transmembrane Helix	128	148	0.87
Non-Cytoplasmic	149	182	0.87
Transmembrane Helix	183	201	0.86
Cytoplasmic	202	208	0.70
Transmembrane Helix	209	228	0.84
Non-Cytoplasmic	229	244	0.76
Transmembrane Helix	245	269	0.88
Cytoplasmic	270	277	0.88