YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88597930, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEWLLARR YLSSKKGRFL CSPMSVFSIL GISIGVATLV SVMAVMSGFS AKLLHNILGM  60
   61 NGHITVHCQD VDYHTVIPEV ESTAGVVSAV AVLEGQVMVK SEHAAVGAVL RGMEMPDISD 120
  121 KLSQYVVSGD TEELEAGIII GSRLAESLNV YYGDEVVVIS SSSFSTMPRT HEYKVTGIFN 180
  181 VGMYEYDSAF VYVPLESAQT LLGYDGGMQY VEVRVDDALH SSNIVKELIE KTKMRVEDWK 240
  241 VQHGQYFYAL ELERDAMFFI LTLIIVVAAF NIISGISVLV QDKTKAVAVM RTMGLSKFAV 300
  301 ARIFCMCGVC IGAIGTGIGC CLGVLFSLNM ERVSDFLMMF GQGAFFESIA YCLEGIPSKM 360
  361 VFLDVVRVAS LSLCISLIAA LLPALRAAYQ NPVDILKYE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.87
Transmembrane Helix	20	45	0.82
Non-Cytoplasmic	46	256	0.94
Transmembrane Helix	257	280	0.93
Cytoplasmic	281	299	0.90
Transmembrane Helix	300	326	0.91
Non-Cytoplasmic	327	335	0.78
Transmembrane Helix	336	355	0.74
Cytoplasmic	356	364	0.62
Transmembrane Helix	365	387	0.86
Non-Cytoplasmic	388	399	0.75