YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88597928, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAHLWKRGI DFLGSRFAIM GGAMSWVSEP YLVSAISNAG GFGVLACGAM STSDLKTAIE  60
   61 KTFELTSLPF GVNLIVMHPD LDSLIDTCLQ AGVSHIVLAG GIPSGKVIST IKNSNARSMC 120
  121 FAPSLSVARR LVRMGVDALI IEGMEAGGHI GPVSTSVLAQ EILPFFRKSP QLCDVPVFIA 180
  181 GGIGTGDMIG SYLKMGACGC QIGTLFVCAS ESRAHKNFKE AFIKSSSRDA VPTVQLSTEF 240
  241 PVLPVRAITN SASMRFVDLQ REVIEMYNSG EISKEEGQLR IEKFWAGSLR KAVVDGDVED 300
  301 GSLMAGQSVG LINEVRSVKQ IISDLVVEAE SYLSECQS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.69
Transmembrane Helix	12	28	0.68
Non-Cytoplasmic	29	338	0.54