YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88597923, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.69
Transmembrane Helix	6	25	0.94
Cytoplasmic	26	31	0.62
Transmembrane Helix	32	49	0.72
Non-Cytoplasmic	50	54	0.78
Transmembrane Helix	55	77	0.87
Cytoplasmic	78	86	0.84
Transmembrane Helix	87	106	0.95
Non-Cytoplasmic	107	115	0.73
Transmembrane Helix	116	135	0.95
Cytoplasmic	136	147	0.88
Transmembrane Helix	148	171	0.88
Non-Cytoplasmic	172	180	0.77
Transmembrane Helix	181	203	0.88
Cytoplasmic	204	214	0.84
Transmembrane Helix	215	234	0.87
Non-Cytoplasmic	235	238	0.66
Transmembrane Helix	239	257	0.61
Cytoplasmic	258	267	0.49
Transmembrane Helix	268	289	0.63
Non-Cytoplasmic	290	294	0.61
Transmembrane Helix	295	318	0.82
Cytoplasmic	319	325	0.67
Transmembrane Helix	326	347	0.83
Non-Cytoplasmic	348	358	0.75
Transmembrane Helix	359	381	0.86
Cytoplasmic	382	571	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHSSYLLDV IVLLAAAVVV VVLFWKLRIS PVLGYFVAGA AIGTHGLQLV ESSSIINSLA  60
   61 EFGVVFLLFL IGIELTFERL SAMRMHVFGF GTLQVIVTAT LIWCVARGLG VDSESSVVIG 120
  121 GALALSSTAI VLQVLQEKGM QSSQVGRLSI AVLLLQDFAV VPLIVLLPLL AGESNSLVGS 180
  181 LFIAFLKAGV ALALIFVTGR LLLRPLFGTI AAMKSNEVFI ASTLLIVLGA AFVTENFNLS 240
  241 MALGAFVSGL LVAETEYRYD VEQVVLPFKK LLLGLFFMTV GMSIDTELLL SKLPVVAALS 300
  301 LSLMLLKSFI VCVLCRCFRF SLSAGLQAGL LLSQGGEFSF ILFGLAAEKS VLSHDLAQVL 360
  361 MMATTVTMAF TPLLATLGNW ISGFLTKNKV SYTSSALVLD TSDLDQHVIV VGFGRVGRLV 420
  421 AKVLMAEHVN YIASDIQPSV VTEGRKEGFP VYLGDLTKLE VLTAMGASRA TAIAIAINNE 480
  481 VTAKKVIALV AKNFPDTIIA VRIPDLSNAD MYKKLGAHYL IPETYEAGLQ LGGIALSISG 540
  541 FSDNAILSLQ NAFRMEDYQR PVKKESSDDV R