YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88597914, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.46
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVLCGVGS FLPHKAVTNE DLSLIVDTTD EWIFRRTGIK RRYLVSEGEA TSDMAVKAAE  60
   61 AALSDAGVSA EEVDLIVVAT STPDSTLPSC ATMVQGKLGC TKAFAFDMNA ACSGFVYAIS 120
  121 VVDSLIKTGQ VGVALLIGAE SMSKIVDWHD RSTCVLFGDG AGACVFKGDG KASNRGIVDT 180
  181 ALYTDGTLGD ILYTDGGVAS TCTAGHIRMK GTVLFEHAIL KLSSSVEGLL KKNAIGIDAI 240
  241 DWFIPHQANV RIVDLVAKRL GISQDKVVLG IGDHANTSAA SIPLAMSDAR RDGKLQEGQL 300
  301 VLLAAIGAGV TWGASLIRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	299	0.68
Transmembrane Helix	300	317	0.55
Cytoplasmic	318	319	0.25