YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88606831, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFPSVVTM LGLCAGLTSI KYTFAGNWEL AAILIIVAAF MDGIDGRIAR LLNSATGFGA  60
   61 QLDSLADFLN FGVAPAFLLY FWLLRDMKVI GWMLVMIFVV CMSIRLARFN VSLNKDKEKD 120
  121 DWRKYFFVGV PAPIGAGLSL VPVMLTFSDI NIAVLDDALQ NKNIIAIYFV FVAFLSVSNI 180
  181 PTASAKYHSI PKRLSYLFIT LLAVLMVLAI TNPWITFPIM GFTYLMSIPI FGVYYMYVDS 240
  241 KRSNMEEEDA EALLFENDED DDNV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.66
Transmembrane Helix	7	25	0.75
Non-Cytoplasmic	26	29	0.71
Transmembrane Helix	30	49	0.85
Cytoplasmic	50	63	0.78
Transmembrane Helix	64	83	0.88
Non-Cytoplasmic	84	88	0.86
Transmembrane Helix	89	109	0.92
Cytoplasmic	110	124	0.94
Transmembrane Helix	125	146	0.94
Non-Cytoplasmic	147	163	0.91
Transmembrane Helix	164	183	0.95
Cytoplasmic	184	193	0.84
Transmembrane Helix	194	211	0.96
Non-Cytoplasmic	212	218	0.60
Transmembrane Helix	219	238	0.89
Cytoplasmic	239	264	0.95