YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88606824, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLWSCIVQ MSLWLVFSGY SDWFFIASGI VSSVLSVLLY SVLEKSVPKE HYKKFPSFAV  60
   61 GRLRLAKNFC LYCVWLLYQV IGSSIYVTKS VFAPCVKRCS PVVAYVDTSQ KSGLGAFMLV 120
  121 NSITLTPGTV GVSIASDGKV KVLALDKTLL SGVSEIDSKI RATFNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.87
Transmembrane Helix	21	43	0.89
Cytoplasmic	44	63	0.86
Transmembrane Helix	64	82	0.70
Non-Cytoplasmic	83	113	0.75
Transmembrane Helix	114	135	0.45
Cytoplasmic	136	166	0.63