YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.99
Transmembrane Helix	42	61	0.96
Non-Cytoplasmic	62	68	0.78
Transmembrane Helix	69	89	0.92
Cytoplasmic	90	109	0.91
Transmembrane Helix	110	132	0.91
Non-Cytoplasmic	133	158	0.95
Transmembrane Helix	159	181	0.91
Cytoplasmic	182	219	0.95
Transmembrane Helix	220	240	0.88
Non-Cytoplasmic	241	274	0.84
Transmembrane Helix	275	299	0.85
Cytoplasmic	300	319	0.92
Transmembrane Helix	320	341	0.68
Non-Cytoplasmic	342	387	0.69
Transmembrane Helix	388	410	0.89
Cytoplasmic	411	414	0.66
Transmembrane Helix	415	438	0.86
Non-Cytoplasmic	439	458	0.62
Transmembrane Helix	459	480	0.73
Cytoplasmic	481	501	0.69
Transmembrane Helix	502	525	0.88
Non-Cytoplasmic	526	557	0.77
Transmembrane Helix	558	580	0.65
Cytoplasmic	581	596	0.47
Transmembrane Helix	597	622	0.81
Non-Cytoplasmic	623	631	0.54
Transmembrane Helix	632	660	0.72
Cytoplasmic	661	675	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSMMMEREG RNEIEREVID DLEETQNEGD DFKSIPPWKE QITFRGIVAS LIIGIIYSVI  60
   61 VMKLNLTTGL VPNLNVSAAL LAFVFLRSWT KLLTKAGIVT KPFTKQENTV VQTCAVACYS 120
  121 IAVGGGFGSY LLGLNRITYE QSGGTHTDGN YPEGTKEPGI GWMTAFLFFT CFVGLLALVP 180
  181 LRKIMIIDYK LTYPSGTATA VLINGFHTPK GNKMAKKQVF GFVKYFSFSF IWAFFQWFFS 240
  241 GGTECGFIQF PTFGLEALKN TFYFDFSMTY VGAGMICPHI VNISLLFGAV LSWGIMWPLI 300
  301 KGLKGDWFPS TLPENSMKSL NGYKVFISIS LILGDGLYQF IKILFKTGIN MYVKLNNRNS 360
  361 GKSNSEKDKQ SIADLKRDEI FVRDSIPLWV AAVGYAAFSV VSIIAIPIMF PELKWYFIVV 420
  421 AYMLAPSLGF SNAYGAGLTD MNMAYNYGKV ALFILAAMAG KQNGVVAGLV GCGLIKSIVS 480
  481 ISSDLMHDFK TGHLTLTSPR SMLVSQAIGT AIGCVVAPLT FFLFYKAFDV GNQEGEYKAP 540
  541 YALVYRNMAI LGVEGFSALP QHCLQLCYGF FAFAVAANLV RDRLPDKIGN WVPLPMAMAV 600
  601 PFLVGGYFAI DMCVGSLIVF AWNMRDRVKA GLMVPAVASG LICGDGLWIL PSSVLALAGV 660
  661 RPPICMGFMP SKYSS