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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|87280846
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLQRRSWLW LYIRIGVILG DILGRKPSIR EQHGGNSCYQ LNRLFCDFQE ADNYCHAQRG  60
   61 RLAHTWNPKL RGFLKSFLNE ETVWWVRGNL TLPGSHPGIN QTGGDDVLRN QKPGECPSVV 120
  121 THSNAVFSRW NLCIEKHHFI CQAAAFPPQG ASIWRNEFGP GPLLPMKRRG AETERHMIPG 180
  181 NGPPLAMCHQ PAPPELFETL CFPIDPASSA PPKATHRMTI TSLTGRPQVT SDTLASSSPP 240
  241 QGTSDTPASS SPPQVTSATS ASSSPPQGTS DTPASSSPPQ VTSATSASSS PPQGTSDTPA 300
  301 SSSPPQVASA TSASSSPPQG TSDTPASSSP PQVTSATSAS SSPPQGTSDT PASSSPPQGT 360
  361 LDTPSSSSPP QGTSDTPASS SPPQGTSETP ASNSPPQGTS ETPGFSSPPQ VTTATLVSSS 420
  421 PPQVTSETPA SSSPTQVTSE TPASSSPTQV TSDTPASNSP PQGTSDTPGF SSPTQVTTAT 480
  481 LVSSSPPQVT SDTPASSSPP QVTSDTPASS SPPQVTSETP ASSSPPQVTS DTSASISPPQ 540
  541 VISDTPASSS PPQVTSETPA SSSPTNMTSD TPASSSPTNM TSDTPASSSP TNMTSDTPAS 600
  601 SSPPWPVITE VTRPESTIPA GRSLANITSK AQEDSPLGVI STHPQMSFQS STSQALDETA 660
  661 GERVPTIPDF QAHSEFQKAC AILQRLRDFL PTSPTSAQVS VANLLIDLSE QLLVLPFQKN 720
  721 NSWSSQTPAV SCPFQPLGRL TTTEKSSHQM AQQDMEQVED MLETSLMALG EIHRAFCQQS 780
  781 LCPQSAVTLA SPSATLMLSS QNVSTLPLST YTLGEPAPLT LGFPSAEALK ELLNKHPGVN 840
  841 LQVTGLAFNP FKTLDDKNIV GSIGNVQLSS AYQSIRVHDL IEDIEIMLWR NASMETQPTS 900
  901 LNTSTDHFTI SVNITSLEKT LIVTIEPESP LLMTLHLGFQ DQLAHTHFYL NISLPRDQVW 960
  961 QKDEEYTWVL TPENLWYGTG TYYIMAVENK STEAAQHTPV LVSVVTAVTQ CYFWDRYNRT1020
 1021 WKSDGCQVGP KSTILKTQCL CDHLTFFSSD FFIVPRTVDV ENTIKLLLHV TNNPVGVSLL1080
 1081 SSLLGFYILL AMWASRKDRE DMQKVKVTVL ADNDPSSASH YLIQVYTGYR RRAATTAKVV1140
 1141 ITLYGSEGHS EPHHLCDPEK TVFERGALDV FLLSTGSWLG DLHGLRLWHD NSGDSPSWYV1200
 1201 SQVIVSDMTT RKKWHFQCNC WLAVDLGNCE RDRVFTPASR SELSSFRHLF SSTIVEKFTQ1260
 1261 DYLWLSVATR HPWNQFTRVQ RLSCCMALLL CDMVINIMFW KMGGTTAKRG TEQLGPLAVT1320
 1321 LSELLVSIQT PIILFPIHLI FGRLFQLIHP PEALPQLPFI QAAWPPALVC ESPSLTQVVK1380
 1381 ELKETVGFLL RRNTQLLSEC EPSSCSSCDI NKLAKLLSGL IYCHLEDEGC HQQTESHWED1440
 1441 AVSENHYHFC RYLLQLLRRL KAHLEALGAT QDHQSCDFSE AVSQLQNLQE LLETQTLRRG1500
 1501 PGPCRHSTSF PILSPGEGKK PMSFCLFKWL KCSCWLLLGV ISLASAFFIT LYSLELDKDQ1560
 1561 ATSWVISMML SVLQDIFISQ PIKVIFLTLL FSLMANHMPW LNKDKEQHAR RIVALWAKCP1620
 1621 WSAPGLRDKN NPIYTAPAMN NLAKPTRKAW KKQLSKLTGG TLVQILFLTL LMTTVYSAKD1680
 1681 SSRFFLHRAI WKRFSHRFSE IKTVEDFYPW ANGTLLPNLY GDYRGFITDG NSFLLGNVLI1740
 1741 RQTRIPNDIF FPGSLHKQMK SPPQHQEDRE NYGAGWVPPD TNITKVDSIW HYQNQESLGG1800
 1801 YPIQGELATY SGGGYVVRLG RNHSAATRVL QHLEQRRWLD HCTKALFVEF TVFNANVNLL1860
 1861 CAVTLILESS GVGTFLTSLQ LDSLTSLQSS ERGFAWIVSQ VVYYLLVCYY AFIQGCRLKR1920
 1921 QRLAFFTRKR NLLDTSIVLI SFSILGLSMQ SLSLLHKKMQ QYHCDRDRFI SFYEALRVNS1980
 1981 AVTHLRGFLL LFATVRVWDL LRHHAQLQVI NKTLSKAWDE VLGFILIIVV LLSSYAMTFN2040
 2041 LLFGWSISDY QSFFRSIVTV VGLLMGTSKH KEVIALYPIL GSLLVLSSII LMGLVIINLF2100
 2101 VSAILIAFGK ERKACEKEAT LTDMLLQKLS SLLGIRLHQN PSEEHADNTG SSNLRERSSK2160
 2161 SMSSDAEVLA PADAVGSVSG TDGNSGSTKV L

YRC Informatics Platform - Version 3.0
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