YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74194586
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSHRSDKM YQVPLTLDRD GTLVRLRFTM VALITVCCPL VAFFFCILWS LLFHFKETTS  60
   61 THCGVPNYLP SVSSAIGGEV PQRYVWRFCI GLHSAPRFLT AFAYWNHYLS CASPCPGYRL 120
  121 LCRINFSLNV VENLALLVLT YVSSSEDFTI HENAFIVFIA ASLGYMLLTC ILWRLTKKHT 180
  181 VSQEDRKSYS WKQRLFVINF ISFFSALAVY FRHNMYCEAG VYTIFAILEY TVVLTNMAFH 240
  241 MTAWWDFGNK ELLITSQPEE KRF

Type	Start	End	Confidence
Cytoplasmic	1	28	0.85
Transmembrane Helix	29	52	0.90
Non-Cytoplasmic	53	88	0.79
Transmembrane Helix	89	108	0.57
Cytoplasmic	109	120	0.60
Transmembrane Helix	121	142	0.63
Non-Cytoplasmic	143	153	0.83
Transmembrane Helix	154	175	0.94
Cytoplasmic	176	194	0.93
Transmembrane Helix	195	213	0.94
Non-Cytoplasmic	214	220	0.81
Transmembrane Helix	221	244	0.85
Cytoplasmic	245	263	0.94