YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAPA_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASGAMAK HEQILVLDPP SDLKFKGPFT DVVTTNLKLQ NPSDRKVCFK VKTTAPRRYC  60
   61 VRPNSGIIDP GSIVTVSVML QPFDYDPNEK SKHKFMVQTI FAPPNISDME AVWKEAKPDE 120
  121 LMDSKLRCVF EMPNENDKLN DMEPSKAVPL NASKQDGPLP KPHSVSLNDT ETRKLMEECK 180
  181 RLQGEMMKLS EENRHLRDEG LRLRKVAHSD KPGSTSAVSF RDNVTSPLPS LLVVIAAIFI 240
  241 GFFLGKFIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	225	0.68
Transmembrane Helix	226	248	0.86
Cytoplasmic	249	249	0.66