YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86129582, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPGGGGPMK DCEYSQISTH SSSPMESPHK KKKIAARRKW EVFPGRNKFF CNGRIMMARQ  60
   61 TGVFYLTLIL ILVTSGLFFA FDCRYLAEKI TPAIPVVGGI LFFFVMGTLL RTSFSDPGVL 120
  121 PRATPDEAAD LERQIDIANG TSSGGYRPPP RTKEVIINGQ TVKLKYCFTC KIFRPPRASH 180
  181 CSLCDNCVEQ FDHHCPWVGN CVGKRNYRFF YMFILSLSFL TVFIFAFVIT HVIHRSQQKG 240
  241 FLDALKDSPA SVLEAVICFF SVWSIIGLSG FHTYLISSNQ TTNEDIKGSW SNKRGKENYN 300
  301 PYSYGNIFTN CCVALCGPIS PSLIDRRGYI QPDTPQPAAP SNGITMYGAT QSQSDMCDQD 360
  361 QCIQSTKFVL QAAATPLLQS EPSLTSEELH MPGKPGLGTP CASLTLGQPT PPSSMPNLAT 420
  421 EATLSDIMPL KDEHGGHQFL TPDEAPSPPR MLGAGSPLAH SRTMHMLGLA SQDSLHEDSV 480
  481 RGLVKLSSV

Type	Start	End	Confidence
Cytoplasmic	1	61	0.91
Transmembrane Helix	62	81	0.95
Non-Cytoplasmic	82	89	0.76
Transmembrane Helix	90	112	0.89
Cytoplasmic	113	208	0.91
Transmembrane Helix	209	233	0.88
Non-Cytoplasmic	234	251	0.86
Transmembrane Helix	252	274	0.73
Cytoplasmic	275	489	0.64