YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AFAF_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFILLIFLS GVFLPNIFSL QPTVEQGPGV TISDDQYYDE EENNTDENSA IFQKLEDNGG  60
   61 DTPANEKTGN YYKDIKQYVF TTPDSKGTKT EVSVTATTDL KFTMKDYKSS KATASGEEDK 120
  121 RSEPSRKSST PNVPAFWTML AKAINETAVS MDDKDLFYQA IPASDLNSTN EDQLSELEEI 180
  181 KLKLMLGISL MTLILLIPLL IFCFATLYKL RHLRDKTCES QYSVNPELAT LSYFHPSEGS 240
  241 NQTVLTEESS FLPPEESGKV VIIESNTVNE AEVTEERISE

Type	Start	End	Confidence
Signal Peptide	1	19	0.87
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	183	0.97
Transmembrane Helix	184	207	0.91
Cytoplasmic	208	280	0.95