YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71891595, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAQASQPI CWIPTWGLLL LLWPVTTATQ DCPRPCTCQS LETMGLKVNC EGRGLTALPV  60
   61 LPANTRQLLL TNNSLRSVPP GAFDHMPQLW ELKVAHNPWH CDCSLTYLRL WLEDHMPEAL 120
  121 SHVYCASPDL ATQRPLGQLT GYELGNCGWK LPPSWAYSGI WWDVSLVAVA VLGLILLAGL 180
  181 LNTFTESRN

Type	Start	End	Confidence
Signal Peptide	1	28	0.84
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	158	0.89
Transmembrane Helix	159	181	0.89
Cytoplasmic	182	189	0.69