YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72255569, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.50
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	36	0.50
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	262	0.91
Transmembrane Helix	263	283	0.86
Cytoplasmic	284	303	0.76
Transmembrane Helix	304	326	0.93
Non-Cytoplasmic	327	341	0.74
Transmembrane Helix	342	362	0.93
Cytoplasmic	363	369	0.63
Transmembrane Helix	370	390	0.91
Non-Cytoplasmic	391	402	0.63
Transmembrane Helix	403	422	0.71
Cytoplasmic	423	441	0.49
Transmembrane Helix	442	465	0.88
Non-Cytoplasmic	466	881	0.59
Transmembrane Helix	882	900	0.39
Cytoplasmic	901	909	0.62
Transmembrane Helix	910	932	0.88
Non-Cytoplasmic	933	1086	0.75
Transmembrane Helix	1087	1108	0.92
Cytoplasmic	1109	1127	0.80
Transmembrane Helix	1128	1152	0.85
Non-Cytoplasmic	1153	1165	0.79
Transmembrane Helix	1166	1189	0.87
Cytoplasmic	1190	1196	0.87
Transmembrane Helix	1197	1219	0.87
Non-Cytoplasmic	1220	1234	0.85
Transmembrane Helix	1235	1255	0.86
Cytoplasmic	1256	1292	0.89
Transmembrane Helix	1293	1313	0.79
Non-Cytoplasmic	1314	1773	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPFKKLKLL LWKNFVLKKR KTLVTVLETL MPVLFSAIVL YLRLNSMPRN KANTNYPAVD  60
   61 VSLLPVYFHN YPLKSKFQLV YIPSKSETLK AVTEVVEQTF AVDFEVLGFP SVSLFENYII 120
  121 KDPKSFYVLV GIVFHHDFNS SNEPLPLVVK YDLRFSYVQR NSISPPRHLF FQEDIEGWCT 180
  181 AFLYPPNLSQ APREFSYADG GHPGYNKEGF LAIQHAVDKA IMLHHAPKAA LDMFKNLQVS 240
  241 VQRFPSGSHI QDPFLVILQN EFPLLLMLSF ICVELIITNS ILLEKERKQK EYMYLMGLEN 300
  301 WLHWVAWFIT FFLSALVTVS GMTVLFCTKM NGVAVFRNSN PTLIFIFLMC FAIATIFFAF 360
  361 MMSTFFQRAH VGTVIGGIVF FFTYLPYMYI TFSYHQRTYS QKILSCLFSN VAMAMGVRFI 420
  421 SLFEAEGTGI QWRNMGSVWG DFSFTQVLVM LLLDSFLYCL VAFLVESLFP RKIGMPKSWY 480
  481 IFAKCPLWRK KSFPVIPPLL VIGDPEKTSK GDFLQDEPAG HINAIEIQHL YKVFYTGRSK 540
  541 CIAVKDLSMN LYKGQITVLL GHNGAGKTTV CSVLTGLIPP SKGHAYIHGC EISKDMVRIR 600
  601 KNVGWCPQHD ILFDNFTVTD HLYFYGQLKG LSHQDCHEKI EEMLHTLGLE DKRNSRSKFL 660
  661 SGGMKRKLAI GIALIAGSKV LILDEPTSGM DSSSRRAIWD LLQQQKGDRT VLLTTHFMDE 720
  721 ADLLGDRIAI LAKGELQCCG TPSFLKQKYG AGYYMTIIKT PLCDTEKLAK VIYHHIPNAI 780
  781 LESRIGEEMI FTLPKKAMPR FEALFADLEQ RQTELGISTF GASVTTMEEV FIRVCKLADP 840
  841 STNVLTEKRP SLRHLPRNHR VPVDRIKCLH SRIFSLSSDQ PIRLNTGFSL LCQQFYAMLL 900
  901 KKVAFSRRNW MLVLSVQILL PLVIIMLSLS FFNFKLRKLD NVPLELTLQT YGQTIVPFFI 960
  961 AENSRLDPQL SDNFVKMLVA AGQVPLRIQG SVENFLLKKA KEAPEDFDKL YVVAASFEDV1020
 1021 NDHTTVKALF NNQAYHSPSL ALALVDNVLF KLLSGANASI TTTNYPQPQT AMELSETILY1080
 1081 QGPKGHYLVV NFLFGIAFLS SSFSILTVGE KSIKSKNLQF LSGVSMAAFW LSALLWDLIS1140
 1141 FLVPTLLLVL VFFWYKEEAF AHPQSIPAVV LIMMLYGWAI IPLVYTVSFS FKTPGSGCVK1200
 1201 LVAMLTFLSI SPVVLVTVTS EIDLGYTELS DTLDHIFLIF PGHCLGMAFS NLYYNFEIKK1260
 1261 FCNAKNLSDI DCNDVLEGYV VQKNIYAWES LGIGKYLTAL AILGPVYITL LFLTEANAFC1320
 1321 ALKARLSGFF CKQKLRMLLN VTGAEDEDVL EEAENIKYHL DTLIKKSPLV VKELSKVYKE1380
 1381 KVPLLAVNKV SFVVKEKECF GLLGLNGAGK TSIFNMLTRE QPITSGDAFV KGFNIRTDMA1440
 1441 KVQQWIGYCP EFDALLNFMT GREMLVMHAR IRGIPECHIK TCVDMILENL LMCVYADKLV1500
 1501 KTYSDGNKRV LSTAIALLGE PTVILLDEPS TGMDPVARRL VWDAVGRVRE SGKTIVITSH1560
 1561 SMEECEALCT RLAIMVQGQF KCLGSPQHLK SRFGSGYSLQ AKVRRKWQQQ MLEEFKAFVD1620
 1621 LTFPGSSLED EHQSMVQYYL PGQNLSWAKV FGIMEQAKKD YVLEDYSISQ LSLEDIFLSF1680
 1681 TRPVPDTKEN IQQGQAALDS SLSPSNSRPI SSPPSSPPSS PPSSPPSRPP SRPSQPPSRP1740
 1741 PSRHPSSPSQ PPSRPPSRHP SSPSQPPSEP VLL