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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|123229690, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAASTSKWG LITNVVNSIV GVSVLTMPFC FKQCGIVLGA LLLVFCSWMT HQSCMFLVKS  60
   61 ASLSKRRTYA GLAFHAYGKA GKMLVETSMI GLMLGSCITF YVVIGDLGSN FFAPLLGLQV 120
  121 TRTVRVFLLF AVSLFIVLPL SLQRNMMASI QSFSAMALLF YTVFMFVIVL SSLKHGLFSG 180
  181 QWLRQVSYIR WEGVFRCVPI FGMSFACQSQ VLPTYDSLDE PSVKTMSSIF ASSLNVVTAF 240
  241 YVMVGFFGYV SFTDATTGNV LIHFPSNPVT EMIRVGFVMS VAVGFPMMIL PCRQALNTLL 300
  301 FEQQQKDGTF AAGGYMPPLR FKVLTLSVVF GTMVGGVMIP NVETILGFTG ATMGSLICFI 360
  361 CPALIYKKAH KNAPSAQVVL WVGLGILVVS TLTTLSVTEE APLDLTQEAR SGHRGDAEGA 420
  421 MKVEAARLSV QDPVVVVAED SQEKLKPAED KEVLEQAQIK GPVDVPGGEA PKEKQEAAQL 480
  481 DRPGQGIAVP MGEAHRHEPP IPHDKVVVDE GQDQEGPEEK KPPPRLPDEG DPAGRGQGAP 540
  541 PLPESEKEKQ EPERGGEGKR PGQVLAVGET EHPQKVPEAN GQPPVQPRKE DSRPGNRDPQ 600
  601 PAAQARDSVE LKALAADDGR EPAQKAGGAL WKPVESAAES DAGGKAGLPV QRPEAAEQRE 660
  661 KKEAEQQGGD QAGSKLEEAG RAEMLDHAVL LQVIQEQQVQ QKRLLDQQEK LLAVIEEQHK 720
  721 EIRQQRQEGE EDKPKPADVQ PEPGVAVLRG QEEEAEHAGE TLGDDPSQPL QPVLGAPRGR 780
  781 PAPSQDMGQH LPGEVKVLPG RDLADLPAGG SETEPQGAPI DLREDPKAAI KAAGAGKELV 840
  841 PGDLEAVHKA APPEVPKSPE KQVAKAVAGQ RQDVFGEGSE ERKETGKEAM APGADTQKEA 900
  901 VQPLVGAEAK DTKSRQSGPT KAPVQTQAKF HPEPQAIFDT GQGSHPEVRS EAPRAVHIPP 960
  961 EEQHKGKGGA AIQEAKQRPD PNSGPKLAVP AGQKPENAKP NRDLKVQAGS DLRRRRRDLA1020
 1021 SHPEQELAPK DGVIISFNSL PNVQVNDLRS ALDTQLRQAA GAALQVVHSR QIKQLSGDLE1080
 1081 EA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle