YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89886325, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.65
Transmembrane Helix	44	62	0.41
Non-Cytoplasmic	63	69	0.75
Transmembrane Helix	70	90	0.91
Cytoplasmic	91	98	0.76
Transmembrane Helix	99	118	0.85
Non-Cytoplasmic	119	126	0.80
Transmembrane Helix	127	150	0.88
Cytoplasmic	151	169	0.92
Transmembrane Helix	170	191	0.93
Non-Cytoplasmic	192	202	0.86
Transmembrane Helix	203	224	0.91
Cytoplasmic	225	282	0.96
Transmembrane Helix	283	301	0.94
Non-Cytoplasmic	302	331	0.94
Transmembrane Helix	332	354	0.88
Cytoplasmic	355	366	0.81
Transmembrane Helix	367	388	0.82
Non-Cytoplasmic	389	597	0.85
Transmembrane Helix	598	617	0.68
Cytoplasmic	618	627	0.66
Transmembrane Helix	628	651	0.86
Non-Cytoplasmic	652	657	0.68
Transmembrane Helix	658	681	0.92
Cytoplasmic	682	719	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKMKDKDVD AEKYEKAQRS PKLCGTNYPV SIAFIVVNEF CERFSYYGMK AVLTLYFMNY  60
   61 LHWDKNLSTA IYHAFSGLCY FTPLLGALIA DSWLGKFKTI IYLSIVYVIG HVVKSVGAIP 120
  121 DVGDSTVHIA LSMVGLGLIA LGTGGIKPCV AAFGGDQFDE DNIDERRKFF SIFYMSINAG 180
  181 SVLSTIITPI LRGDVQCFGG DCYALAFGVP AALMVIALVV FISGSGLYKK SPPEGNVLVR 240
  241 VCKCIGFAIS NRWTNSKKSP KRSHWLDWAE EKYSKRLIQE IKMVCRVLVL YIPLPMFWAL 300
  301 FDQQGSRWTL QATRMNMDFG GGFIIKPDQM QMLNALLILV FIPIFDMGIY PLVGLCRIKL 360
  361 TPLKKMATGM ILAALAFCAA TAVEVYVIKT VVEPPPAKES LVQVYNLMDS DVTVQFPAHN 420
  421 VFSEPLKPYE EPSGYSSLPL TGESQLQNVV VSHNGVNYEC RLTFTERMAY SLLLHPPAQS 480
  481 GGSVCNLVKD HITKSETGAA YIRFINTHTE NINVTVGTEE VHASANYGIS RNISVPRGEY 540
  541 NKAVCVTDSK EYEINLGLLD FGAFYTVILS ETGNNLAIKK MEDIQANNIH IGWQIPQYVF 600
  601 LTAGEVMFSI TGLEFSYSQA PASMKSVLQA GWLMTVAFGN VIVLIVAEGA GMEQWVEFLL 660
  661 FAALLVAVSI IFSIMAYFYT YVDPDQLDKL FKEEGDGGKV ESSKKDELSL GEIPKQTKM