YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|162955754, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGCGGEWLS TPVASSCLEN VTMENSSVGR IYEVMLQSTN STKRNPQFVG VELLQSFKPL  60
   61 IIPCYALVVL VGVFGNYLLL YVICQTKKMH NVTNFFIGNL AFSDMLMCAT CVPFTLAYAF 120
  121 NPRGWVFGRF MCYLVFLIQP VTVYVSVFTL TAIGVDRYYA TVHPLKKRIS VLACTYLLSG 180
  181 IWILSCGLVA PAVAHTYHVE FKDEGFTICE EFWMGQEKER LAYAYSTLFI TYVLPLSALC 240
  241 ISYLCISVKL RNCVVPGHRT QSQAEAQRAR KRKTFRLVSL VVAAFGICWL PISVFNVLRD 300
  301 IDIDLIDKRY FLLIQLLCHL CGMSSSCCNP FLYAWLHDRF RAELRKMFTC HRRIGIGIPA 360
  361 NNCATASVVL

Type	Start	End	Confidence
Non-Cytoplasmic	1	60	0.94
Transmembrane Helix	61	83	0.90
Cytoplasmic	84	94	0.88
Transmembrane Helix	95	117	0.91
Non-Cytoplasmic	118	132	0.77
Transmembrane Helix	133	155	0.85
Cytoplasmic	156	171	0.84
Transmembrane Helix	172	194	0.90
Non-Cytoplasmic	195	221	0.95
Transmembrane Helix	222	246	0.82
Cytoplasmic	247	274	0.90
Transmembrane Helix	275	295	0.93
Non-Cytoplasmic	296	311	0.90
Transmembrane Helix	312	336	0.89
Cytoplasmic	337	370	0.89