YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74187453
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNGIIAKDPT SLEEEIKEIR RSGSSKALDK TPEFELSDIF YFCRKGMETI MDDEVTKRFS  60
   61 AEELESWNLL SRTNYNFQYI SLRLTILWGL GVLIRYCFLL PLRIALAFTG IGLLVVGTTM 120
  121 VGYLPNGRFK EFLSKHVHLM CYRICVRALT AIITYHNRKN RPRNGGICVA NHTSPIDVII 180
  181 LASDGYYAMV GQVHGGLMGV IQRAMVKACP HVWFERSEVK DRHLVAKRLT EHVQDKSKLP 240
  241 ILIFPEGTCI NNTSVMMFKK GSFEIGATVY PVAIKYDPQF GDAFWNSSKY GMVTYLLRMM 300
  301 TSWAIVCSVW YLPPMTREKD EDAVQFANRV KSAIARQGGL VDLLWDGGLK REKVKDTFKE 360
  361 EQQKLYSKMI VGNHEDRSRS

Type	Start	End	Confidence
Cytoplasmic	1	78	0.85
Transmembrane Helix	79	99	0.84
Non-Cytoplasmic	100	103	0.68
Transmembrane Helix	104	125	0.91
Cytoplasmic	126	293	0.59
Transmembrane Helix	294	312	0.50
Non-Cytoplasmic	313	380	0.51