YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87241063
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAVIEITKS LLTFGLLTIR FIGERGTDNL EFGQELSGIL MMTPEPSREL EKLEITGHHV  60
   61 RGSTEYVRLA ISDEPRVAEA EMLQPQAESR ITSFKWWMKV SIWGFIIVIL SLLLVKWGVP 120
  121 FAFEKVLYPV MEWEATAFGR PVLALVLIAS LALFPVLLIP SGPSMWLAGM IFGYGLGFVI 180
  181 IMVGTTIGMV LPYLIGLKFR DRIHQWLEKW PQNAAMIRLA GEGSWFHQFQ VVALFRTSPF 240
  241 PYTIFNYAVV VTDMKFWPYF CGSVAGMVPE AFIYIYSGRL IKSLADAQYG RHHMTTVEIV 300
  301 YNIISFIIAV ITIVGFTVYA KRTLNKLKIA EANEEAASVS GNASLEMKKV SP

Type	Start	End	Confidence
Cytoplasmic	1	99	0.79
Transmembrane Helix	100	119	0.93
Non-Cytoplasmic	120	136	0.74
Transmembrane Helix	137	159	0.89
Cytoplasmic	160	169	0.60
Transmembrane Helix	170	195	0.84
Non-Cytoplasmic	196	225	0.76
Transmembrane Helix	226	249	0.60
Cytoplasmic	250	255	0.65
Transmembrane Helix	256	278	0.85
Non-Cytoplasmic	279	298	0.75
Transmembrane Helix	299	320	0.94
Cytoplasmic	321	352	0.79