YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87240996
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLLPLFFY VIAFFCTVGA IALAILHIYR HLLNYTEPTY QRFIVRIVFM VPVYALMSFL  60
   61 SLVLPRLSIY FNSIREVYEA WVIYNFLSLC LAWVGGPGSV VISLSGRVLK PSVCLMTCCF 120
  121 PPIPLDGRFI RKCKQGCLQF VILKPILVVV TLILYAKGKY KDGNFNPKQS YLYLTIIYTF 180
  181 SYTMALYALA LFYVACKDLL QPFNPVPKFI IIKSVVFLTY WQGVLFFLAA KSGFIQDADE 240
  241 AALLQNFIIC VEMLIAAVGH FYAFPYKEYA GANIGGSRGL TASLGHALKL NDFYHDTVHQ 300
  301 FAPTYHDYVL YNHSEGEEGT RKYRSRTFVP IGPEMDNVRK NKHITGNKVD DIQLTSFSSD 360
  361 SSTPSNSGSL PDASNSDAIK SSLLVDVSTS ASIPYDLTLI DLDVSSYPEE VPAADKAGLR 420
  421

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.70
Transmembrane Helix	7	29	0.93
Cytoplasmic	30	42	0.68
Transmembrane Helix	43	64	0.90
Non-Cytoplasmic	65	80	0.62
Transmembrane Helix	81	104	0.86
Cytoplasmic	105	136	0.75
Transmembrane Helix	137	156	0.89
Non-Cytoplasmic	157	173	0.85
Transmembrane Helix	174	196	0.91
Cytoplasmic	197	208	0.91
Transmembrane Helix	209	230	0.86
Non-Cytoplasmic	231	241	0.76
Transmembrane Helix	242	264	0.87
Cytoplasmic	265	420	0.90