YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87240799
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSNLNQL LHTNTLPVTS LNSTPSISPS TITVGFLNKH VRKPIVLADG LRRVVYVQAN  60
   61 RIDDEWGPEP SAGVAVAEVQ ATEKVSDGET EKLKKALVGS FYGTDRGLKA TSETRAEIVE 120
  121 LITQLEAKNP TPASTDALSL LNGKWILAYT SFAGLFPLLS SGLLPLLTVE EISQTIDSES 180
  181 LTVQNSVLFA GPLTTTSIST NAKFEVRSPN RLQIKFEEGV IGTPQLTDSL EIPENVEVLG 240
  241 QKIDLSPFKG IFTSVQNTAS SVVQTISNQP PLKIPISNDN AQSWLLTTYL DEELRISRGD 300
  301 GGSVFVLIKE GSSLLTN

Type	Start	End	Confidence
Cytoplasmic	1	144	0.67
Transmembrane Helix	145	166	0.64
Non-Cytoplasmic	167	317	0.90