YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87240525
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKDPTNLFI LFGILLLSIT KTQSQATNDN PTNPNFNQEF NPSFAIIIVI LVAALFLMGF  60
   61 FSIYIRRCSD SPSSNNLLLP ITNGRRAVAR GLDPSVIETF PILEYSEVKI HKIGKDVLEC 120
  121 AVCLMEFEDT ETLRLIPKCD HVFHPECIDE WLSSHTTCPV CRANLVPQPG DSVHGVPESQ 180
  181 QQDVEAQNDA VQLPTESDSV LLAPEVISLN KTLNRNRTRG SQSNRPRRFP RSHSTGHSLI 240
  241 QPGENTDRFT LKLPNKVRKQ IMSRQLQRAR SLITLPRESS SRHGYRTGGE GSNRGKSLRR 300
  301 LDLSFKSDRW IFNRAPSFLA RALSFRSPKP KVNNSDDDEG TSSAAAPIMP SSAVDSARPQ 360
  361 I

Type	Start	End	Confidence
Signal Peptide	1	24	0.71
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	43	0.85
Transmembrane Helix	44	65	0.90
Cytoplasmic	66	361	0.90