YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72015515, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMQTVQQEY MQTPPITRLY CTSCVLTTLA VQLDILSPFQ LYFNPDLIFN HFEVWRLITN  60
   61 FMYFGAIGFN FLFNMIFTYR YCRMLEEGSF RGRTADFFFM FFFGGTLMTI IALFVNLVFL 120
  121 GQAFTIMLVY VWSRRNPYIR MNFFGLMNFP APYLPWVLLG FSVLLGNSII VDLIGMVVGH 180
  181 IYYFLEDVFP TQRGGFKLIK TPGILKTLLD TAPEDPNYNP LPEEERPGGY DWGEDQRPQN 240
  241 EEDQPQENQD QH

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	36	0.88
Non-Cytoplasmic	37	56	0.85
Transmembrane Helix	57	78	0.89
Cytoplasmic	79	96	0.87
Transmembrane Helix	97	120	0.92
Non-Cytoplasmic	121	152	0.79
Transmembrane Helix	153	176	0.84
Cytoplasmic	177	252	0.86