YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87042570, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRPLTTSPS SSSSTSSSAC ILPTQSETPR PKRAKRAKKS SLRSDVKPQN PTSPASTRRS  60
   61 SIYRGVTRHR WTGRYEAHLW DKSSWNSIQN KKGKQVYLGA YDSEEAAAHT YDLAALKYWG 120
  121 PNTILNFPVE TYTKELEEMQ RCTKEEYLAS LRRQSSGFSR GVSKYRGVAR HHHNGRWEAR 180
  181 IGRVFGNKYL YLGTYNTQEE AAAAYDMAAI EYRGANAVTN FDIGNYIDRL KKKGVFPFPV 240
  241 SQANHQEAVL AETKQEVEAK EEPTEEVKQC VEKEEAKEEK TEKKQQQEVE EAVITCCIDS 300
  301 SESNELAWDF CMMDSGFAPF LTDSNLSSEN PIEYPELFNE MGFEDNIDFM FEEGKQDCLS 360
  361 LENLDCCDGV VVVGRESPTS LSSSPLSCLS TDSASSTTTT ATTVTSVSWN YSV

Type	Start	End	Confidence
Signal Peptide	1	26	0.85
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	413	0.99