YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72383046, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEIGASRE TQSLANGSLV AEAVAQQLEA MLSAGNYDGV KLLLSPVQPV DIAQAIGTLP  60
   61 MILQALAFRL LNKNEAIEVY EYLDPSVQQN LLDRLRSNEV LDLVEEMSPD DRVRLFDELP 120
  121 AKVVRRLLAE LSPEERRVTA QLLGYESETA GRLMTTEFID LKEFLSVSQA LKLVRQRATF 180
  181 SETIYSLYVT DKERHLTGIL SLRDLVVADP ESLIGEVMTR EVVNVRTDTD QEEVARAIQR 240
  241 YDFLALPVVD LEKRLVGIVT VDDVIDVIEQ EATRDIYAAG AVQAGDEDDY FQSNLFVVAR 300
  301 RRIVWLAVLV LANGLTTQVI AMNDEVLKQV VLLTAFIPLL IGAGGNVGAQ SSTVVIRGLS 360
  361 TQRIQRLGLF RAIAKEALAG ALLGVSMAVF VVPFAWWQGQ GPLVATAVGI SLIAITTLAA 420
  421 TAGASLPLLF DRMGLDPALM SAPFITTATD VAGVLIYLKT ASWLLGRLG

Type	Start	End	Confidence
Cytoplasmic	1	302	0.93
Transmembrane Helix	303	322	0.93
Non-Cytoplasmic	323	331	0.86
Transmembrane Helix	332	356	0.86
Cytoplasmic	357	376	0.84
Transmembrane Helix	377	397	0.93
Non-Cytoplasmic	398	404	0.80
Transmembrane Helix	405	429	0.88
Cytoplasmic	430	438	0.83
Transmembrane Helix	439	461	0.77
Non-Cytoplasmic	462	469	0.78