YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72495841, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	310	0.86
Transmembrane Helix	311	331	0.92
Non-Cytoplasmic	332	350	0.84
Transmembrane Helix	351	371	0.87
Cytoplasmic	372	381	0.71
Transmembrane Helix	382	408	0.80
Non-Cytoplasmic	409	428	0.81
Transmembrane Helix	429	448	0.96
Cytoplasmic	449	465	0.72
Transmembrane Helix	466	487	0.85
Non-Cytoplasmic	488	507	0.84
Transmembrane Helix	508	531	0.90
Cytoplasmic	532	542	0.90
Transmembrane Helix	543	564	0.58
Non-Cytoplasmic	565	569	0.51
Transmembrane Helix	570	599	0.68
Cytoplasmic	600	607	0.44
Transmembrane Helix	608	630	0.91
Non-Cytoplasmic	631	647	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITELLTKD TIAMDLSASD KNGVIDELVN QLNQAGKLND LTSFKEAIHN RESQSTTGIG  60
   61 EGIAIPHAKV AAVNTPAIAF GKSKIGVDYQ SLDMQPAHLF FMIAAPEGGA QTHLDALAKL 120
  121 SGILMDENVR ASLLHAESPE EVLNIIDKAD DEATEEEAAE AQGTPASTTD SNEPYILAVT 180
  181 ACPTGIAHTY MARDALKKQA EKMNVKIKVE TNGSGGIKNH LTDEDIQNAT GVIVAADVHV 240
  241 ETDRFDGKNV VEVPVADGIK RPEELIHLAQ DTSRKPFVAK GGNTGNKGAA SNEKQGVGNT 300
  301 IYKHLMNGVS NMLPLVIAGG ILMAIAFLFG ANSFDPKSSE YNAFAEQLWN IGNKSAFMFI 360
  361 IPILAGYIAR SIADKPGFAS GLVGGLLAST GDSGFIGGII AGFLAGYLTL GIKKLTSGMP 420
  421 QSLEGLKPTL IFPVLSVSIT GLLMIYVINP PASWLNNTLL NGLQSLSGTN IMLLGLVVGA 480
  481 MMAIDMGGPF NKAAYVFSVA ALTEGNAAPI TAAMIGGMVP PLAIATAMLI FRKKFTKEQK 540
  541 GSIVPNYVMG LSFITEGAIP FAAADPLRVI PSMMVGSGVA GAIALGLGSS IQAPHGGIIV 600
  601 ILGTDFSHVL QSLIAIIVGA IVAAIIYGLL KPKLTQDEIQ SSEAMNE