YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73663309, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENFQNLPP YIQALIAGII TWLLTALGAA AVFIFKRVND KILNSMQGFA AGIMIAASFW  60
   61 SLLQPAIDYG EGSSVPWLPA AIGFLLGGLF IRGLDLVIPH IHPNTQDTNQ YHEGVGTKKL 120
  121 NKNTLLVLAI TLHNIPEGLS IGVAFGGIVS GNGQATFLGA LGLAIGIGIQ NIPEGAALSM 180
  181 PIRAAGASRW KAFNYGQASA IVEPIFATIG AAAVLIITPM LPYALAFAAG AMIFVVVEEL 240
  241 IPDSQASNNT DLATLSLMVG FIIMMILDVA LG

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.89
Transmembrane Helix	14	35	0.95
Cytoplasmic	36	42	0.90
Transmembrane Helix	43	63	0.90
Non-Cytoplasmic	64	74	0.75
Transmembrane Helix	75	94	0.92
Cytoplasmic	95	124	0.92
Transmembrane Helix	125	148	0.83
Non-Cytoplasmic	149	154	0.73
Transmembrane Helix	155	173	0.88
Cytoplasmic	174	192	0.77
Transmembrane Helix	193	217	0.79
Non-Cytoplasmic	218	220	0.61
Transmembrane Helix	221	241	0.77
Cytoplasmic	242	251	0.62
Transmembrane Helix	252	271	0.93
Non-Cytoplasmic	272	272	0.76