YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72495820, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAFIDTLIQ RRGELLTTIF EHIQISFIAL LIAALIGVPL GIALTKTRKL SEVIMNIAAV  60
   61 LQTIPSLALL GLMIPLFGIG KVPAVIALVV YALLPILRNT YTGINEVDPS LVEAAKGIGM 120
  121 KPGRRLSKVE LPIAMPVIMA GIRTAMVLII GTATLAALIG AGGLGDLILL GIDRNDTSLI 180
  181 LIGAIPAALL AILFDLVLRY MQNMSYKKLL ISLGVIVIIL LLVIIAPMLG QKGDKVTLAG 240
  241 KLGSEPSVIT NMYKILIEQD TEDTVEVKDG MGKTSFLFNA LKSDDIDGYL EFTGTVLGEL 300
  301 TKEDLKSKKE AQVYQQAKSS LEDKFDMTML KPMKYNNTYA LAVKRDFAEA HHIKTIGDLN 360
  361 KVSDQIKPGF TLEFNDRGDG YPAVKKAYDL DLGDVKTMEP KLRYQAIENG DINLIDAYST 420
  421 DAELKEYDMV VLEDDKHVFP PYQGAPMFKE SYLKEHPEIK KPLNKLEGKI SDEDMQQMNY 480
  481 DVTVKNKDPY QVAKDYLEKH NLIKH

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.76
Transmembrane Helix	23	44	0.92
Cytoplasmic	45	52	0.71
Transmembrane Helix	53	74	0.81
Non-Cytoplasmic	75	78	0.50
Transmembrane Helix	79	97	0.78
Cytoplasmic	98	143	0.85
Transmembrane Helix	144	165	0.86
Non-Cytoplasmic	166	177	0.78
Transmembrane Helix	178	198	0.95
Cytoplasmic	199	208	0.84
Transmembrane Helix	209	230	0.93
Non-Cytoplasmic	231	505	0.96