YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73663103, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYVLKRLG YMILSLFIII SITFFLMKLM PGSPFNDEKL NEEQKQILNE KYGLNDPVPV  60
   61 QYVSYLKNVV TGDFGNSFQY DNQPVWELIK PRLVPSLEMG LTAMVIGVII GLILGVIAAV 120
  121 RQNTWVDYTA TVISVIAVSV PSFVLAVLLQ YVFSVRLQWF PVAGWEGIST AVLPSLALSA 180
  181 AVLATVARYI RAEMIEVLSS DYILLARAKG NSTMRVLFGH ALRNALIPVI TIIVPMLASI 240
  241 LTGTLTIENI FGVPGLGDQF VRSITTNDFP VIMATTILFS TLFIVSIFLV DILYGVIDPR 300
  301 IRVQGGKK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	27	0.96
Non-Cytoplasmic	28	98	0.96
Transmembrane Helix	99	120	0.91
Cytoplasmic	121	129	0.79
Transmembrane Helix	130	152	0.91
Non-Cytoplasmic	153	166	0.85
Transmembrane Helix	167	190	0.85
Cytoplasmic	191	223	0.96
Transmembrane Helix	224	247	0.88
Non-Cytoplasmic	248	271	0.93
Transmembrane Helix	272	295	0.89
Cytoplasmic	296	308	0.92