YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72495222, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEDNVRQE TKNKKEKLRL SFPETRFMKF MGGKDLLFAL IMLILIGIAI FIFDQVSYIF  60
   61 KPFIIVFNTI VAPIIVSIIL YYLFNPLVNL MERYNISRLW GVIILFLVII GVIALAINLL 120
  121 IPVIGTQFKS FGNNFPHYVD KVNQFIDNLT RNSLISNFYG QIQEQLDALA NKLPSMVSDY 180
  181 FNGFGSKVKN FAEAIVNVGV VIATTPFVLF FMLKDSHHFK EYSTKLMPPK FRKDYHDLLD 240
  241 KMSVQVGSYI QGQIIVSFCI GILLFIGYSI IGLDYSLILA SIAAVTSVVP YLGPTIAISP 300
  301 AIIIALITSP IMLLKLIIVW TAVQFIEGHF ISPNIMGKTL KIHPLTIIFI LLSAGNLLGV 360
  361 VGVILGIPAY AILKVLVSHL YSMYKRRYNK YYGDDAGEYE ITNDEQIR

Type	Start	End	Confidence
Cytoplasmic	1	35	0.95
Transmembrane Helix	36	53	0.98
Non-Cytoplasmic	54	62	0.72
Transmembrane Helix	63	84	0.94
Cytoplasmic	85	98	0.88
Transmembrane Helix	99	124	0.87
Non-Cytoplasmic	125	190	0.98
Transmembrane Helix	191	213	0.90
Cytoplasmic	214	248	0.95
Transmembrane Helix	249	271	0.87
Non-Cytoplasmic	272	276	0.66
Transmembrane Helix	277	298	0.71
Cytoplasmic	299	300	0.45
Transmembrane Helix	301	326	0.75
Non-Cytoplasmic	327	344	0.61
Transmembrane Helix	345	377	0.77
Cytoplasmic	378	408	0.80