YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72494658, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.85
Transmembrane Helix	5	24	0.87
Cytoplasmic	25	40	0.92
Transmembrane Helix	41	62	0.92
Non-Cytoplasmic	63	73	0.82
Transmembrane Helix	74	99	0.85
Cytoplasmic	100	105	0.86
Transmembrane Helix	106	128	0.88
Non-Cytoplasmic	129	149	0.90
Transmembrane Helix	150	169	0.95
Cytoplasmic	170	197	0.92
Transmembrane Helix	198	218	0.93
Non-Cytoplasmic	219	246	0.96
Transmembrane Helix	247	266	0.95
Cytoplasmic	267	285	0.90
Transmembrane Helix	286	308	0.91
Non-Cytoplasmic	309	317	0.82
Transmembrane Helix	318	338	0.95
Cytoplasmic	339	360	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWLIISGLV VGALLGFVMQ RTRFCLAGGF RDMYIQKSNK MFYALLIAIS VQSIGLLLLT  60
   61 STRLVEIPES TYPIIGTVIG SFIFGLGIIM AGGCATGTWY RAGEGLIGSW MALIAYAFTS 120
  121 AATKFGLLLP LMNGLNKPTN VNTSMSQTTG IPTWVFVIVL IVITLFFVVK TLRKPKFAVP 180
  181 KLKQKFTGIR HYLFEKKYHP FVAAIAVGLI ALLAWPVSES TGRMYGLGIT TPSANLVQFF 240
  241 VTGDLKLLDW GVFLVLGIFF GSYIAAKGAK EFKWRLPDKK TIRNSIIGGV LMGFGASVAG 300
  301 GCSIGNGLVE TATMSWKGWI ALASMILGAW TMSYFVFIRP MKKAQSQTSN TKVSSQTQTS 360
  361