YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73661859, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.97
Transmembrane Helix	5	25	0.94
Cytoplasmic	26	139	0.98
Transmembrane Helix	140	158	0.94
Non-Cytoplasmic	159	177	0.83
Transmembrane Helix	178	198	0.95
Cytoplasmic	199	205	0.90
Transmembrane Helix	206	229	0.90
Non-Cytoplasmic	230	234	0.84
Transmembrane Helix	235	256	0.92
Cytoplasmic	257	263	0.88
Transmembrane Helix	264	286	0.90
Non-Cytoplasmic	287	293	0.87
Transmembrane Helix	294	314	0.95
Cytoplasmic	315	324	0.84
Transmembrane Helix	325	345	0.91
Non-Cytoplasmic	346	351	0.87
Transmembrane Helix	352	373	0.91
Cytoplasmic	374	392	0.87
Transmembrane Helix	393	414	0.93
Non-Cytoplasmic	415	423	0.78
Transmembrane Helix	424	446	0.87
Cytoplasmic	447	453	0.79
Transmembrane Helix	454	472	0.93
Non-Cytoplasmic	473	488	0.79
Transmembrane Helix	489	509	0.91
Cytoplasmic	510	525	0.85
Transmembrane Helix	526	548	0.80
Non-Cytoplasmic	549	598	0.92
Transmembrane Helix	599	620	0.90
Cytoplasmic	621	631	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMTFIIIYV VIALILVGLL NVFLTKRKHN KVNQQVEQTK HESHVSNEIY QSKFKVNDTE  60
   61 DSQESSKESK ATNEDDRENK DENDELNTFS TDTNDTEVEQ QDDSDHEAIN PNSEEAKVNE 120
  121 KLKEKHSTFM FGKGTTQGKV LIAMIFGMFI AILNQTLLNV ALPMINTDFN ISANTGQWLM 180
  181 TGFMLVNGIL IPVSAYLFNK YSYRKLFLVA MTLFTIGSLV CGLSESFTIM MVGRVLQAIG 240
  241 AGILMPLGTN VFMTIFPPER RGAAMGTLGI AMILAPAIGP TLSGYIVENY HWNVMFYGMF 300
  301 IIGLVSLAIA YIWFRVYQVT TNPKADVPGI IFSTIGFGAL LYGFSEAGNN SWSSPIVVIS 360
  361 LILGVIFIIA FVIRELTMRV PMLSMEVLKY SGFTLTTVIN MIVTMSLFGG MILLPLYLQN 420
  421 LRGFTPIQSG LLLLPGALIM GVMGPIAGKL LDTIGIKPLA LVGTAIMTYA TWELTKLNMN 480
  481 TTYGHLMLIY IIRSFGMSFI MMPIMTAGMN ALPQRLIAHG NALSNTLRQL AGSIGTALLV 540
  541 TVMSTQTTQY AAGYAQDLDK TNPFIKDRLQ EMAQALGGEQ MATSQVLEFV QKLASINGVN 600
  601 SAFLIATALS ALAFILSLFL KGKDHYMSKE N